FastQCFastQC Report
Thu 29 Dec 2022
EGAF00002168685

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002168685
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences193446837
Sequences flagged as poor quality0
Sequence length20-95
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGC6386810.3301584093618445No Hit
CGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCT5053720.26124593600876506No Hit
CTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCCAGGAGTTCTGGG4728510.2444345988453665No Hit
ACCCATTCGAACGTCTGCCCTATCAACTTTCGATGGTAGTCGCCGTGCCT4672060.2415164844489031No Hit
GCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGC4456840.23039094715205916No Hit
GCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTT3669510.1896908761552922No Hit
TCGAACGTCTGCCCTATCAACTTTCGATGGTAGTCGCCGTGCCTACCATG3303470.17076888158166162No Hit
GCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGC3079460.1591889558783533No Hit
CGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCT2322410.12005417281648291No Hit
CTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCCAGGAGTTCTGGG2090600.10807103555795022No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)