FastQCFastQC Report
Thu 9 Feb 2023
EGAF00002168816

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002168816
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences104052037
Sequences flagged as poor quality0
Sequence length20-125
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT3009080.2891899175409704No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG1433510.13776856670283158No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC1311060.1260004165031387No Hit
CTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATC1224660.11769687891838197No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)