FastQCFastQC Report
Fri 10 Feb 2023
EGAF00002168830

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002168830
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences112254488
Sequences flagged as poor quality0
Sequence length20-125
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGGGCGGTACACCTGTCAAACGGTAACGCAGGTGTCCTAAGGCGAGCT1701380.1515645414551265No Hit
CTGGTTAATTCCGATAACGAACGAGACTCTGGCATGCTAACTAGTTACGC1618870.1442142785418076No Hit
GTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATT1238270.11030917534450829No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)