FastQCFastQC Report
Wed 21 Dec 2022
EGAF00002168990

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002168990
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences217749681
Sequences flagged as poor quality0
Sequence length20-95
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGT5001070.22967060052776841No Hit
GTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGAGAG2561330.11762726761468825No Hit
ATTAGTCTTTCGCCCCTATACCCAGGTCGGACGACCGATTTGCACGTCAG2230690.1024428596063018No Hit
GGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAA2196230.10086030849340256No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)