FastQCFastQC Report
Mon 23 Jan 2023
EGAF00002169031

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002169031
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences163127744
Sequences flagged as poor quality0
Sequence length20-95
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCTTGTTACGACTTTTACTTCCTCTAGATAGTCAAGTTCGACCGTCTTC2467670.15127224465263248No Hit
ACGGAGGCCATCGCCCGTCCCTTCGGAACGGCGCTCGCCCATCTCTCAGG2092910.12829883799533204No Hit
CTGAACCCGACTCCCTTTCGATCGGCCGAGGGCAACGGAGGCCATCGCCC1756250.1076610242338667No Hit
TTATCCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGT1693250.10379902023287958No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)