FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002192157

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002192157
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18960439
Sequences flagged as poor quality0
Sequence length76
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1567860.8269112334371583No Hit
CCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT401630.2118252641724171No Hit
CCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT251250.13251275458337225No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)