FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002192159

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002192159
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19185390
Sequences flagged as poor quality0
Sequence length76
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1586320.8268375049972921No Hit
CCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT401940.2095031688175221No Hit
CCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT257270.13409683097398592No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)