FastQCFastQC Report
Fri 24 Mar 2023
EGAF00002207492

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002207492
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences103668586
Sequences flagged as poor quality0
Sequence length35-101
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGTATCGAAGGCCTTTTTGGACAGGTGGTGTGTGGTGGCCTTGGTATG1492340.1439529617969324No Hit
CTGCTGTTAGAGAAATGAATGAGCCTACAGATGATAGGATGTTTCATGTG1298280.12523369422633004No Hit
CTAGATTTTATGTATACGGGTTCTTCGAATGTGTGGTAGGGTGGGGGGCA1094750.10560093874532059No Hit
CTCCGATTATGATGGGTATTACTATGAAGAAGATTATTACAAATGCATGG1057100.10196917318810542No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)