FastQCFastQC Report
Thu 16 Mar 2023
EGAF00002207611

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002207611
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences92730915
Sequences flagged as poor quality0
Sequence length35-101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTACCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC1554060.16758812311945806No Hit
ATCACATGCCTACCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG1215220.13104798976695098No Hit
CCTAGACCAAACCTACGCCAAAATCCATTTCACTATCATATTCATCGGCG1074320.11585348855880478No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)