FastQCFastQC Report
Tue 28 Mar 2023
EGAF00002207640

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002207640
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences86763774
Sequences flagged as poor quality0
Sequence length35-101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGTATCGAAGGCCTTTTTGGACAGGTGGTGTGTGGTGGCCTTGGTATG1209410.1393911242265695No Hit
CTGCTGTTAGAGAAATGAATGAGCCTACAGATGATAGGATGTTTCATGTG1000830.11535113721540052No Hit
CTAGATTTTATGTATACGGGTTCTTCGAATGTGTGGTAGGGTGGGGGGCA891360.10273412034843021No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)