FastQCFastQC Report
Tue 23 May 2023
EGAF00002207647

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002207647
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences74769043
Sequences flagged as poor quality0
Sequence length35-101
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAAT1701800.22760756747949817No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA1580200.21134415215131214No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC1257170.16814044283006271No Hit
CTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCGCATGA1128190.15088998798607067No Hit
GTATGGCCCACCATAATTACCCCCATACTCCTTACACTATTCCTCATCAC1007610.13476299275356513No Hit
CCTAGACCAAACCTACGCCAAAATCCATTTCACTATCATATTCATCGGCG993420.13286514848130396No Hit
GCAAAATTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCTC978590.13088170728626283No Hit
GCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTC970460.1297943588765741No Hit
CTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAG862160.11530975459990842No Hit
GTTGTAGCTCACTTCCACTATGTCCTATCAATAGGAGCTGTATTTGCCAT834330.11158762591090006No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG816560.10921097385183866No Hit
CATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCT815300.10904245491011567No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC810480.10839780308542935No Hit
GCTGTATTTGCCATCATAGGAGGCTTCATTCACTGATTTCCCCTATTCTC803150.10741745082921551No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC793390.10611209775682164No Hit
CAACACCCTCCTAGCCTTACTACTAATAATTATTACATTTTGACTACCAC790190.10568411314292199No Hit
CGTAAATCTAACTTTCTTCCCACAACACTTTCTCGGCCTATCCGGAATGC789710.10561991545083706No Hit
GAATAATCTCCCATATTGTAACTTACTACTCCGGAAAAAAAGAACCATTT764830.1022923350777674No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)