FastQCFastQC Report
Mon 12 Sep 2022
EGAF00002208470

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002208470
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24626696
Sequences flagged as poor quality0
Sequence length6
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCTGT5833812.3688967452231515No Hit
CTATTA5769372.342730019487795No Hit
ATGTGA4861511.9740812977916324No Hit
TATAAG4565241.8537768931731646No Hit
AAGCAT4280861.7383005824248614No Hit
AGAACG4057851.6477443827625111No Hit
ATACCT4021801.6331057970586067No Hit
AATCGG3934121.5975021578209274No Hit
TGCGAC3892501.5806017989583339No Hit
CTAGTT3733391.5159930507933341No Hit
CATAAC3477181.4119555461276656No Hit
ATCAGC3468531.408443097685536No Hit
GACCAT3385181.3745977129859401No Hit
TATTCT2960011.2019517356286853No Hit
AGATGC2841691.1539063137011965No Hit
TCGTGG2793451.1343178151060134No Hit
TAAGTC2782761.1299769973203064No Hit
TATGGT2762741.121847607977944No Hit
AGACGG2761391.1212994223829293No Hit
TTCGTT2701261.0968828299175821No Hit
GTTACA2688691.091778612932892No Hit
CGTCAG2639401.071763747763809No Hit
TTCACA2639041.0716175649384716No Hit
GTACGC2623951.0654900681764212No Hit
TCTCTG2586121.0501286896139053No Hit
ACCTGC2566051.041978997101357No Hit
CCTTAT2522181.024164995580406No Hit
AACAAT2514351.0209855191293222No Hit
AGTCAA2503791.016697489586098No Hit
CAAGCT2474311.0047267404445972No Hit
ACCGCT2445480.9930199325155108No Hit
ACAGCC2438560.9902099737618072No Hit
TCAAGC2418580.9820968269555932No Hit
AGTAGG2394340.9722538500495559No Hit
AAGTTG2388690.9699595918185696No Hit
TGTGTG2384220.9681444884039662No Hit
GATCCT2366210.9608312865030697No Hit
GGATCG2359860.9582527838894832No Hit
TGGCAT2359410.9580700553578116No Hit
GACCGA2340360.9503345475170523No Hit
ATGGCC2330490.9463267017223911No Hit
TACGGC2324700.9439755946148846No Hit
ATCCAC2319930.9420386721791669No Hit
TAATGA2299320.9336697054286129No Hit
GGATTC2289660.9297471329487318No Hit
AGGTCA2250630.9138984783017584No Hit
GCATAA2248150.9128914410605466No Hit
AACTAG2221320.9019967599388892No Hit
GAGAAG2214300.8991461948448138No Hit
CCTGCT2134570.8667707596666642No Hit
CACCTA2117160.8597011958079962No Hit
GGTACC2098710.8522093260094655No Hit
CAGCCT2082600.8456676445756264No Hit
GTAAGA2045210.8304849339107446No Hit
CTATGC2033820.8258598717424376No Hit
ACTAGC2028470.8236874325325655No Hit
GGAGGC1999650.8119846852375162No Hit
CTACCG1995340.810234551967507No Hit
GAGCCA1968790.7994535685988896No Hit
ACGCTA1944960.7897770776883752No Hit
CGAGAG1943290.7890989518041722No Hit
GAATAC1927280.7825978767107046No Hit
GGCGTT1909800.7754998884137766No Hit
TATTGG1877410.762347494767467No Hit
AGCCTA1865320.7574381882165598No Hit
ACGTAA1862520.7563012106861594No Hit
GGACTA1846300.7497148622779117No Hit
AATGTA1839350.7468927216220966No Hit
CTGTTC1769310.7184520408259395No Hit
GGTGGT1767750.717818581916145No Hit
CAGTAG1747030.7094049481911825No Hit
GCACAT1744660.7084425779243793No Hit
TCAATG1737420.705502678881487No Hit
CCGACT1729980.7024815671578518No Hit
TTAGTA1689740.686141575792384No Hit
AGGACT1640840.6662850753507494No Hit
CACATT1631470.6624802612579455No Hit
CCTCGG1613150.6550411797018975No Hit
CTCGTC1610530.6539772935841658No Hit
AAGAGG1597100.6485238620722813No Hit
CGTGAA1568540.6369266912621977No Hit
GAAGAT1556560.6320620516856991No Hit
GAGCAC1546920.6281476004738922No Hit
GCTTCT1537560.6243468470151254No Hit
ATCCGG1533570.6227266540343048No Hit
GGCCAG1521740.6179229239683635No Hit
CCATGA1472880.5980826660628774No Hit
CGTTGC1471670.597591329344383No Hit
CAACGG1470610.5971609021364457No Hit
ACGAAC1465390.5950412511690565No Hit
GAGTGA1462170.5937337270090962No Hit
CATTAA1437120.5835618387460502No Hit
TTGAAT1402890.569662288436906No Hit
GAGATA1388250.5637175202065271No Hit
TTACGT1366740.5549830963926302No Hit
ATGCCG1355630.5504717319773631No Hit
TGCATA1330610.5403120256164285No Hit
CGAATT1324700.5379121909004765No Hit
AAGGCG1318500.5353945977974471No Hit
CATACG1288750.5233142115369435No Hit
AACCTT1277230.5186363611261535No Hit
GAGTCG1276230.518230297722439No Hit
CAGGAC1239040.5031287997383003No Hit
ACACGA1219400.4951537144893493No Hit
CGAGCC1181050.4795811829569017No Hit
CTGGAG1080330.4386824769347865No Hit
TCCACG979500.3977391039382628No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)