FastQCFastQC Report
Mon 12 Sep 2022
EGAF00002208508

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002208508
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24839241
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTAC3456871.3916971134504472No Hit
GACTAA2914931.1735181441333091No Hit
ACCGCT2881281.159971031320965No Hit
TTCCAT2318600.9334423704814491No Hit
ATACCT2198970.8852806734312052No Hit
GACCAT2185520.8798658541941762No Hit
CTTCAC2134150.8591848680078429No Hit
AAGCAT2056210.8278070976484346No Hit
TCGGAC2045940.8236725107663314No Hit
ATTCAT2045370.8234430351555428No Hit
AGCCTA2043020.8224969514970284No Hit
TAAGTC2036990.8200693410881597No Hit
ATTGCT2009930.8091752884075645No Hit
CTATTA1984700.799017973214238No Hit
TATTCT1957370.7880152215601113No Hit
ATTCGA1933000.7782041327269219No Hit
AGTGCA1894760.7628091373645435No Hit
AACATA1880540.7570843247585544No Hit
CGAGAG1877020.7556672122147372No Hit
GGAGGC1834040.7383639459836957No Hit
AGATGC1795980.7230414166036716No Hit
TACTCG1766110.7110160894207678No Hit
TTCTGT1749090.7041640282003786No Hit
TGACAC1735600.6987331054117153No Hit
TGATAA1731780.6971952162306408No Hit
GCCAAT1728450.6958545955570865No Hit
TTGAAT1718130.6916998792354404No Hit
TGACCA1705950.6867963477628No Hit
GATCAG1672870.6734787105612445No Hit
GGTGGT1670690.6726010669971759No Hit
TCTCGC1660660.6685631014248784No Hit
GTACGC1648460.663651518176421No Hit
TAATGA1640720.6605354809351864No Hit
TATGGT1637630.6592914815714377No Hit
CTCCGC1624090.6538404293432315No Hit
TCTTCA1616800.6509055570578827No Hit
GGCGTT1613730.6496696094699512No Hit
GTTACA1611670.6488402765607854No Hit
CGATGT1591280.6406314911152077No Hit
GATTCA1586230.6385984177213788No Hit
CGTCAG1583660.6375637645288759No Hit
AGTCAA1564910.6300152247003038No Hit
GTAAGA1560810.6283646106577895No Hit
AACCTT1559930.6280103325218351No Hit
TGTGTG1544750.6218990346766232No Hit
GGATTC1536960.6187628679958457No Hit
AGGTGT1525400.6141089415735368No Hit
ACCTGC1522900.6131024695963939No Hit
AGACGG1503470.6052801693900389No Hit
AATCGG1483020.5970472286170097No Hit
GACCGA1469620.5916525388195235No Hit
GCACAT1465100.589832837484849No Hit
TTCACA1463290.5891041517733976No Hit
CTAGTT1452260.5846635974102429No Hit
AATTGC1441480.5803236902448026No Hit
TGCGAC1438460.5791078720964139No Hit
TCAAGC1437810.5788461893823568No Hit
CATTAA1427640.5747518613793392No Hit
TCCTCC1424980.5736809751956592No Hit
ACGCTA1424180.5733589041629734No Hit
GTCTCA1419290.5713902449756818No Hit
ATCCAC1415990.5700617019658532No Hit
GGATCG1410020.5676582468844358No Hit
TATTGG1407540.56665982668311No Hit
AGAACG1406440.5662169790131671No Hit
GCATAA1406270.5661485389187214No Hit
CATAAC1405040.5656533547059671No Hit
CACCTA1394070.5612369556702639No Hit
ACTTGA1394060.5612329297823553No Hit
CCGACT1392150.5604639851918181No Hit
GAACCG1391060.5600251634097837No Hit
CAAGCT1366730.5502301781282286No Hit
GAGCAC1363770.5490385153072914No Hit
AACTAG1360570.5477502311765484No Hit
CAGCCT1357190.5463894810634512No Hit
TCGTGG1356820.546240523210834No Hit
TCCAGA1353040.5447187375813939No Hit
GGTACC1348090.5427259230666509No Hit
CGAATT1341160.5399359827460106No Hit
TGCGGA1341020.5398796203152906No Hit
GATCCT1336970.5382491357123191No Hit
GTACTT1336770.5381686179541476No Hit
TTCGTT1332580.536481770920456No Hit
ACGTAA1320740.5317151196367071No Hit
ATGTGA1314250.529102318384044No Hit
TCTCTG1313430.5287721955755411No Hit
ATCCGG1295030.5213645618237691No Hit
CGTACT1290500.519540834601186No Hit
GCTCAA1288470.518723579355746No Hit
TGTGAT1284230.5170166028825116No Hit
AACAAT1282180.5161912958612543No Hit
GCGTAT1281130.5157685776308543No Hit
AGTAGG1274790.5132161646968199No Hit
ACTAGC1270880.5116420425245682No Hit
AGGTCA1259140.506915650119905No Hit
AAGTTG1256450.5058326862724992No Hit
GCGGCT1255600.5054904858002706No Hit
TTAGTA1251430.5038116905423962No Hit
GCCTGG1244120.5008687664812302No Hit
ACCAGG1240790.49952814580767585No Hit
ACAGTG1236870.49794999774751575No Hit
TTACGT1231180.49565926752753836No Hit
GAGCCA1223180.49243855720068097No Hit
GAGTCG1173900.4725989815872393No Hit
CGACAA1169740.47092421221727343No Hit
GCTGTC1165910.4693822971482905No Hit
GAGAAG1161780.4677196054420503No Hit
CATGAG1158410.46636288121686165No Hit
TAGAGC1149410.46273958209914706No Hit
CCGCTC1146520.4615761004935698No Hit
TCAATG1139540.45876603073338673No Hit
CGTCTC1132560.4559559609732037No Hit
TACAGT1123090.4521434451237862No Hit
AGGCTT1102800.44397491855729404No Hit
GAGTGA1102780.44396686678147695No Hit
CCGTCG1101080.4432824658370197No Hit
CCTTAT1084480.4365994919087906No Hit
TGGCAT1083130.43605599704113346No Hit
CCACTT1079000.43439330533489334No Hit
AGGACT1077700.43386993990677897No Hit
TTAGGC1075340.43291983036035603No Hit
CAGATC1069310.43049221995148723No Hit
CAGTCC1061210.4272312507455441No Hit
CCATGA1056850.42547596361740686No Hit
GACACG1053130.42397833331541807No Hit
ACACGA1052580.42375690948044664No Hit
AAGCGC1046620.42135748028693787No Hit
TTCTAC1046090.42114410822778364No Hit
CCTGCT1044860.4206489240150293No Hit
ATCAGC1039730.418583643517932No Hit
CGCTTG1000910.40295514665685633No Hit
TTAGCG987150.3974155248946616No Hit
CAGTAG983750.3960467230057473No Hit
CTGAGG983690.3960225676782958No Hit
AGTTAG978880.39408611559427276No Hit
CCTGAC978000.3937318374583184No Hit
GGTAAT973770.3920288868729926No Hit
ACTAAT972200.3913968224713469No Hit
GGCAGG967190.38937985262915237No Hit
TACGAA966130.3889531085108438No Hit
CTATGC962880.387644694940558No Hit
GGCCGT931990.3752087271909798No Hit
TCATGT930720.3746974394265912No Hit
GCGCAG923920.3719598356487624No Hit
CTACCG922810.3715129620909109No Hit
AAGAGG920680.3706554479663851No Hit
GAAGAT917650.3694356039300879No Hit
CAACGG909200.36603372864734474No Hit
GAATAC907960.36553451854668184No Hit
TACGGC905580.36457635722444176No Hit
CTTAGC903250.36363832534174456No Hit
GCTTCT901910.3630988563619959No Hit
AGAGGT901110.3627767853293102No Hit
CTCGTC886430.3568667818795268No Hit
CCAGCG881820.35501084755367524No Hit
GTGGTG878100.35351321725168655No Hit
AATGTA851240.3426996823292628No Hit
ACAGCC840060.33819873964747954No Hit
ATGCCG832770.33526386736213076No Hit
CTGTAT826310.3326631437731934No Hit
TATAAG818720.3296074948505874No Hit
GTCTGC817910.3292813979299931No Hit
GGACTA811980.3268940464002101No Hit
CACATT809660.3259600404054214No Hit
CATACG809390.32585134143189No Hit
TAGCTT805390.32424098626846126No Hit
AGTTCC801180.3225460874589526No Hit
CCTCGG800950.32245349203705537No Hit
GAGATA797890.3212215703370324No Hit
CAAGGA795950.32044054808276956No Hit
AACTCT788240.3173365885052607No Hit
CGAGCC772390.31095555617017445No Hit
GGCCAG770980.3103879059750658No Hit
CTGGAG766150.30844340211522564No Hit
GTCGAG764220.30766640574887133No Hit
CAGGAC723850.2914138962619671No Hit
CGTGAA722140.2907254694296013No Hit
TCCACG669010.26933592697135955No Hit
GCCATA664210.2674035007752451No Hit
AAGGCG660070.2657367831810964No Hit
GTTGGC650660.2619484226591304No Hit
ATGGCC643680.25913835289894727No Hit
TGCATA643110.25890887728815865No Hit
CCGGAA641590.25829694232605577No Hit
CGTTGC629780.25354236870603253No Hit
ATTGAA625570.25184746989652385No Hit
CTGTTC596680.24021667972865998No Hit
GACTTG523450.21073510257418895No Hit
ACGAAC495650.19954313418835945No Hit
CGAAGC375820.151300919379944No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)