FastQCFastQC Report
Wed 22 Feb 2023
EGAF00002208602

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002208602
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences90219169
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC1244180.13790639104645266No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT1226070.13589905710614558No Hit
CGCAAAACTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT1012620.11224000522549703No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)