FastQCFastQC Report
Sat 11 Mar 2023
EGAF00002208608

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002208608
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences85899815
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN2377380.2767619464605366No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG1059850.123382105072054No Hit
CTACACGCCGCCGCTTGTGCTGCAGCCATGTCTCTAGTGATCCCTGAAAA882550.10274178122502359No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)