FastQCFastQC Report
Thu 9 Feb 2023
EGAF00002208636

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002208636
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences102556504
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT1781230.17368279246336243No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT1151300.11226006689931631No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC1040880.10149331923404876No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)