FastQCFastQC Report
Mon 19 Dec 2022
EGAF00002212671

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002212671
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences230517363
Sequences flagged as poor quality0
Sequence length100
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCG7999450.34702158205757366No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC3959590.17176970742980432No Hit
CGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCCGT3667530.15909994597673754No Hit
CTCTAAATCCCCTTGCAAATTTAACTGTTAGTCCAAAGAGGAACAGCTCT3657160.15865008832328173No Hit
CTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCGT3331980.14454355874268784No Hit
CTACAATCAACCAACAAGTCATTATTACCCTCACTGTCAACCCAACACAG3173960.13768854366080877No Hit
CTGAACTCCTCACACCCAATTGGACCAATCTATCACCCTATAGAAGAACT3060770.13277828447135237No Hit
CCTCGATGTTGGATCAGGACATCCCGATGGTGCAGCCGCTATTAAAGGTT2895650.12561526656020267No Hit
CCAAGATAGAATCTTAGTTCAACTTTAAATTTGCCCACAGAACCCTCTAA2862400.12417285894425228No Hit
CGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGG2827760.12267015218285315No Hit
CTTTAAATTTGCCCACAGAACCCTCTAAATCCCCTTGCAAATTTAACTGT2781960.12068331703065681No Hit
GTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGG2671580.11589495755250333No Hit
CCCAACACAGGCATGCTCATAAGGAAAGGTTAAAAAAAGTAAAAGGAACT2574350.11167705401870313No Hit
CTTACTTTTAACCAGTGAAATTGACCTGCCCGTGAAGAGGCGGGCATGAC2548340.11054872252724841No Hit
CTGAGTTCAGACCGGAGTAATCCAGGTCGGTTTCTATCTACTTCAAATTC2511560.1089531811102663No Hit
CCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCCAGGAGTT2442140.10594169429224297No Hit
TTTAAATTTGCCCACAGAACCCTCTAAATCCCCTTGCAAATTTAACTGTT2394810.10388848669937284No Hit
CAACAATAGGGTTTACGACCTCGATGTTGGATCAGGACATCCCGATGGTG2349440.10192030523965345No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)