FastQCFastQC Report
Mon 12 Sep 2022
EGAF00002216899

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002216899
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5647524
Sequences flagged as poor quality0
Sequence length65
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGCACCTCATCTCGTATGCCGTCTTCTGCTTG1410752.4979973524680905TruSeq Adapter, Index 1 (97% over 38bp)
ATCGGAAGAGCACACGTCTGAACTCCAGTCACAGCACCTCATCTCGTATGCCGTCTTCTGCTTGA205320.3635575519466584TruSeq Adapter, Index 1 (97% over 37bp)

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)