FastQCFastQC Report
Mon 12 Sep 2022
EGAF00002216901

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002216901
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5736883
Sequences flagged as poor quality0
Sequence length65
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCATACCAAATCTCGTATGCCGTCTTCTGCTTG772691.346881224525583TruSeq Adapter, Index 22 (97% over 38bp)
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCATACCAAATCTCGTATGCCGTCTTCTGCTTGA82410.1436494347191672TruSeq Adapter, Index 22 (97% over 37bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)