FastQCFastQC Report
Thu 9 Feb 2023
EGAF00002217883

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002217883
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences106883464
Sequences flagged as poor quality0
Sequence length100
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT23329722.1827249161759954No Hit
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGAATAAATCTCGTA1137980.10646922895388197Illumina Paired End PCR Primer 2 (97% over 36bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)