FastQCFastQC Report
Wed 22 Feb 2023
EGAF00002217887

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002217887
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences87619099
Sequences flagged as poor quality0
Sequence length100
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT14033981.6017032998707281No Hit
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCGAAGATCTCGTA933810.10657607880674509Illumina Paired End PCR Primer 2 (97% over 36bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)