FastQCFastQC Report
Fri 10 Feb 2023
EGAF00002217900

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002217900
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences103945421
Sequences flagged as poor quality0
Sequence length100
%GC48

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGT1376190.13239544241203277No Hit
GCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTAC1063900.10235179094613508No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)