FastQCFastQC Report
Tue 24 Jan 2023
EGAF00002217987

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002217987
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences134722763
Sequences flagged as poor quality0
Sequence length100
%GC47

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAGAGG4276100.317399963063406No Hit
GCGGTGTGTACAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGC2779470.20631034712374477No Hit
CCCGTCGGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAG1911930.14191588395496313No Hit
GTACAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACT1715340.12732369510562963No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)