FastQCFastQC Report
Tue 7 Feb 2023
EGAF00002217988

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002217988
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences134722763
Sequences flagged as poor quality0
Sequence length100
%GC48

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTAC3023000.22438672817302593No Hit
CTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGT2172680.16127044544061198No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT1380190.10244668156041306No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)