FastQCFastQC Report
Fri 10 Feb 2023
EGAF00002218048

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002218048
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences109718657
Sequences flagged as poor quality0
Sequence length100
%GC48

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGGTGGCTCACGCCTGTAATCCCAGCTCTCAGGGAGGCTAAGAGGCGGG1711900.15602633561218307No Hit
CGGTGGCTCACGCCTGTAATCCCAGCTCTCAGGGAGGCTAAGAGGCGGGA1380200.12579446720715876No Hit
CGCGGTGGCTCACGCCTGTAATCCCAGCTCTCAGGGAGGCTAAGAGGCGG1323410.12061850155530066No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)