FastQCFastQC Report
Thu 23 Mar 2023
EGAF00002235808

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002235808
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences82136311
Sequences flagged as poor quality0
Sequence length50
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4405390.5363510908104943No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1925230.23439450549465266No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT950070.11566991363904813No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)