FastQCFastQC Report
Wed 15 Mar 2023
EGAF00002235820

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002235820
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences97715135
Sequences flagged as poor quality0
Sequence length50
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGCACTTACTGGGAATTCCTCGTTCATGGGGAATAATTGCAATCCCCG1156530.11835730462839765No Hit
CTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTG1140690.11673626608610836No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT1111430.11374184766771288No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)