FastQCFastQC Report
Sun 2 Apr 2023
EGAF00002238052

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002238052
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18226616
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCG1141380.6262160787279438No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT737900.4048475043310289No Hit
GGGGGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGTCGGCCCACGGC483650.2653537003248436No Hit
GGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTGTCGA449580.2466612562639165No Hit
GGCGTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCG341010.18709452155024278No Hit
GCCGTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCG299680.1644188915814104No Hit
GCCGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT226940.12451022175482274No Hit
GGGGGATGGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGTCGGCCCA221550.12155300797471126No Hit
GGCGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT207670.11393777100477676No Hit
GGGCGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGC195030.10700285779872687No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)