FastQCFastQC Report
Tue 26 Sep 2023
EGAF00002238098

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002238098
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20795307
Sequences flagged as poor quality0
Sequence length101
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT928730.44660557307473264No Hit
GGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTGTCGA822950.39573832692155014No Hit
GGGGTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCG765480.36810228384702376No Hit
GGGGGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGTCGGCCCACGGC553370.2661033087898149No Hit
GGGGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAA373310.17951646494086382No Hit
GGGCGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGC360440.1733275685711204No Hit
GGGGCGGGCCGCCGGTGAAATACCACTACTCTGATCGTTTTTTCACTGAC314010.151000415622621No Hit
GCCGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT275170.13232312463576518No Hit
GGCGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT266880.12833664826395688No Hit
GGGGGATGGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGTCGGCCCA255990.1230998897972509No Hit
GGGGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGTCGGCCCACGGCC243390.1170408304142853No Hit
GGGGGAGCAGAAGGGCAAAAGCTCGCTTGATCTTGATTTTCAGTACGAAT240890.11583863609226833No Hit
GGCGTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCG233310.11219358290791284No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGA218290.1049707994212348No Hit
GGCCGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGC213090.10247023523143949No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)