FastQCFastQC Report
Sat 13 May 2023
EGAF00002238099

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002238099
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20795307
Sequences flagged as poor quality0
Sequence length101
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTCCGCCAGGGCCG1266520.6090412610883792No Hit
GTGGGTTTGTTAGGTACTGTTTGCATTAATAAATTAAAGCTCCATAGGGT770540.3705355251547861No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT734550.35322873569502966No Hit
TTTACTTCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTCCGCCA657900.316369457781989No Hit
GTTTGCATTAATAAATTAAAGCTCCATAGGGTCTTCTCGTCTTGCTGTGT469110.22558455136055458No Hit
CGCCTTAGGACACCTGCGTTACCGTTTGACAGGTGTACCGCCCCAGTCAA394980.18993708532410702No Hit
CTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAG382900.18412808236012096No Hit
CCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTG326310.15691521168694456No Hit
GTGTCCTGCAATTCACATTAATTCTCGCAGCTAGCTGCGTTCTTCATCGA289370.1391515883848216No Hit
TGTTACGACTTTTACTTCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAG276310.13287132524660492No Hit
GTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGA263310.12661991477211662No Hit
CCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAA258430.12427323145553947No Hit
GTCCTGCAATTCACATTAATTCTCGCAGCTAGCTGCGTTCTTCATCGACG255950.12308065468809862No Hit
CCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGA249400.11993090556441412No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGG222320.10690873666832618No Hit
TCCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAG209050.10052748920706003No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)