FastQCFastQC Report
Tue 26 Sep 2023
EGAF00002238100

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002238100
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29440764
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCG1506050.5115526213925699No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT1261830.42859961106987576No Hit
GGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTGTCGA737440.25048263013826677No Hit
GGCGTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCG448290.1522684669460344No Hit
GGGGGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGTCGGCCCACGGC440620.14966323564157505No Hit
GCCGTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCG384040.13044498437608482No Hit
GCCGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT354160.12029579123693937No Hit
GGCGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT337110.11450450130981654No Hit
GGGGGATGGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGTCGGCCCA311300.10573774512101655No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)