FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002238104

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002238104
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18893023
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT807980.4276605178536013No Hit
GGGGTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCG702710.37194153630152255No Hit
GGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTGTCGA575320.30451452898776443No Hit
GGGGGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGTCGGCCCACGGC372850.19734798396212191No Hit
GCCGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT232150.12287604794637681No Hit
GGGCGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGC223080.11807533394735188No Hit
GGCGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT217400.11506893311885556No Hit
GGCGTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCG212510.1124806760675621No Hit
GCCGTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCG192470.10187358582054339No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)