FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002238109

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002238109
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18337252
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTCCGCCAGGGCCG1392020.7591213776197219No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1116190.6087008020612903No Hit
TTTACTTCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTCCGCCA537660.2932064193697071No Hit
GTGGGTTTGTTAGGTACTGTTTGCATTAATAAATTAAAGCTCCATAGGGT435150.23730382284106694No Hit
CCCATCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGA387430.2112802943429037No Hit
GTGTCCTGCAATTCACATTAATTCTCGCAGCTAGCTGCGTTCTTCATCGA266390.14527258500892065No Hit
GTCCTGCAATTCACATTAATTCTCGCAGCTAGCTGCGTTCTTCATCGACG256690.13998280658410542No Hit
GTTTGCATTAATAAATTAAAGCTCCATAGGGTCTTCTCGTCTTGCTGTGT224410.1223792965270914No Hit
CCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTG215860.11771665678150685No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGG197160.10751883651923418No Hit
TGTTACGACTTTTACTTCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAG184790.10077300568263992No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)