FastQCFastQC Report
Mon 3 Apr 2023
EGAF00002238112

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002238112
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23400573
Sequences flagged as poor quality0
Sequence length101
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCG1374400.5873360451472706No Hit
GGGGGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGTCGGCCCACGGC676370.2890399307743447No Hit
GGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTGTCGA647230.27658724425252323No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT602910.25764753709236093No Hit
GGGGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAA474950.20296511542687434No Hit
GGGCGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGC435230.18599117209651234No Hit
GGCGTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCG419290.1791793730862915No Hit
GCCGTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCG340760.1456203657918975No Hit
GGGGGATGGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGTCGGCCCA298060.1273729493717953No Hit
GGCCGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGC258440.11044174003773327No Hit
GGGATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTG257570.11006995426992322No Hit
GGGGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGTCGGCCCACGGCC242950.10382224401086247No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)