FastQCFastQC Report
Sun 2 Apr 2023
EGAF00002238114

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002238114
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23110035
Sequences flagged as poor quality0
Sequence length101
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCG1308250.5660960703867389No Hit
GGGGGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGTCGGCCCACGGC683630.2958152162036968No Hit
GGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTGTCGA644640.27894375754948014No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT601840.26042366443841386No Hit
GGGGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAA478320.20697502188984138No Hit
GGGCGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGC410350.17756355626462703No Hit
GGCGTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCG400090.17312392646744154No Hit
GCCGTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCG321910.139294466667835No Hit
GGGGGATGGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGTCGGCCCA299650.12966228740025706No Hit
GGGATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTG253470.10967962618836362No Hit
GGGGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGTCGGCCCACGGCC242430.10490248067560261No Hit
GGCCGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGC240780.10418850512342365No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)