FastQCFastQC Report
Sun 2 Apr 2023
EGAF00002238116

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002238116
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22445028
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCG1577570.7028594484266181No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT996160.4438221239911128No Hit
GGGGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAA496700.22129622649613093No Hit
GGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTGTCGA484050.21566023441806353No Hit
GGGGGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGTCGGCCCACGGC474400.21136084125179083No Hit
GGCGTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCG466010.20762281962847184No Hit
GCCGTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCG395860.1763686817410074No Hit
GGGGGATGGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGTCGGCCCA309950.13809294423691518No Hit
GGGGGAGCAGAAGGGCAAAAGCTCGCTTGATCTTGATTTTCAGTACGAAT293010.1305456157149815No Hit
GCCGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT287390.12804172042021958No Hit
GGGCGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGC282710.12595662611781994No Hit
GGCGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT266800.11886819655560242No Hit
GGGATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTG249170.11101345028395597No Hit
GGGGGCAGGGGAGATACCATGATCACGAAGGTGGTTTTCCCAGGGCGAGG245090.10919567576391528No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)