FastQCFastQC Report
Sat 13 May 2023
EGAF00002238118

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002238118
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22206599
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCG1503570.6770825194799077No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT1002790.4515729761229984No Hit
GGGGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAA490830.22102889325826075No Hit
GGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTGTCGA484840.21833149686721504No Hit
GGGGGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGTCGGCCCACGGC478260.21536841368640014No Hit
GGCGTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCG442310.1991795321741974No Hit
GCCGTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCG375180.16894977929758628No Hit
GGGGGATGGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGTCGGCCCA313920.1413633848208814No Hit
GGGGGAGCAGAAGGGCAAAAGCTCGCTTGATCTTGATTTTCAGTACGAAT294310.1325326764355046No Hit
GCCGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT285690.12865094740531857No Hit
GGCGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT268000.12068484687817348No Hit
GGGCGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGC267430.12042816642026094No Hit
GGGATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTG247810.11159295486895585No Hit
GGGGGCAGGGGAGATACCATGATCACGAAGGTGGTTTTCCCAGGGCGAGG247720.11155242637560124No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)