FastQCFastQC Report
Sun 14 May 2023
EGAF00002238176

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002238176
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25264365
Sequences flagged as poor quality0
Sequence length101
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGTCGGCCCACGGC967840.38308502905178893No Hit
GGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTGTCGA661830.261961858134966No Hit
GGGGTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCG539130.21339542869967246No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT440170.17422563361477716No Hit
GGGGGATGGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGTCGGCCCA346900.13730802258437924No Hit
GGGGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGTCGGCCCACGGCC340180.13464814967643163No Hit
GGGGGAGCAGAAGGGCAAAAGCTCGCTTGATCTTGATTTTCAGTACGAAT302690.11980906703968218No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)