Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00002238262 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3533180 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGACTAGTAATCTCGTAT | 90494 | 2.5612620925059013 | TruSeq Adapter, Index 11 (97% over 38bp) |
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGACTAGTAATCTCGTA | 18627 | 0.5272021238657527 | TruSeq Adapter, Index 11 (97% over 38bp) |
AATGATACGGCGACCACCGAGAACTCCAGTCACCCTAATCCATCTCGTAT | 14485 | 0.40997062136658763 | Illumina Single End PCR Primer 1 (96% over 25bp) |
AATGATACGGCGACCACCGAGAACTCCAGTCACATCCTGTAATCTCGTAT | 5147 | 0.14567613311521066 | Illumina Single End PCR Primer 1 (96% over 25bp) |