FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002238271

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002238271
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5009113
Sequences flagged as poor quality0
Sequence length101
%GC54

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC390200.7789802306316508Illumina Single End PCR Primer 1 (100% over 50bp)
CGGTGGTCGCCGTATCATTAGATCGGAAGAGCGTCGTGTAGGGAAAGAGT199830.39893290488755195Illumina Single End PCR Primer 1 (100% over 31bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG104620.20885933297971115No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)