FastQCFastQC Report
Wed 8 May 2024
EGAF00002238495

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002238495
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2782031
Total Bases280.9 Mbp
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG255280.9176030029859481Illumina Single End PCR Primer 1 (100% over 50bp)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN31880.1145925404857099No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)