FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002238518

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002238518
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8091882
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA254860.3149576328473401No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAACGCTTAATCTCGTAT245950.30394659734286783TruSeq Adapter, Index 1 (97% over 36bp)
GCCGGTATTTAGCCTTAGATGGAGTTTACCACCCGCTTTGGGCTGCATTC181600.2244224520327904No Hit
CCGGTATTTAGCCTTAGATGGAGTTTACCACCCGCTTTGGGCTGCATTCC142650.17628779065240943No Hit
GTCGGGTCTGCGAGAGCGCCAGCTATCCTGAGGGAAACTTCGGAGGGAAC85010.10505590664816912No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)