FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002253564

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002253564
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences83494
Sequences flagged as poor quality0
Sequence length67-589
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCAGGGT3304839.58128727812777No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCGTGGT1126513.491987448199872No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAAGAGACGGTGACCATTGT881110.552854097300404No Hit
GGAACACATCCGGAGCCTTGGTGGGTGCTGAGGAGACGGTGACCAGGGTT74728.949146046422497No Hit
GGAACACATCCGGAGCCTTGGTGGGTGCTGAGGAGACGGTGACCGTGGTC42585.099767647974705No Hit
GAATTCTCACAGGAGACGAGGGGGAAAAGGGTTGGGGCGGATGCACTCCC30673.6733178431983133No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACAGTGACCAGGGT17902.143866625146717No Hit
GGAACACATCCGGAGCCTTGGTGGGTGCTGAAGAGACGGTGACCATTGTC17552.1019474453254126No Hit
GGGAAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCAGGG15951.9103169089994492No Hit
TGTCTGCACCCTGATATGATGGGGAACACATCCGGAGCCTTGGTGGGTGC13031.5605911802045656No Hit
GGGAAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCGTGG4140.49584401274343065No Hit
GGGAAAAAGGGTTGGGGCGGATGCACTCCCTGAAGAGACGGTGACCATTG3750.44913406951397705No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCATGTCGGGCGCCTGGTCACTG3470.4155987256569334No Hit
GGAACACATCCGGAGCCTTGGTGGGTGCTGAGGAGACAGTGACCAGGGTG3000.35930725561118165No Hit
CCAGGGGGAAGACCGATGGGCCCTTGGTGGAAGCGAGGTGGGGGTCTCAG2060.24672431551967808No Hit
GGAACACATCCGGAGCCTTGGTGGGTGCTGAGGAGACGGTGACCAGGGTG1690.202409753994299No Hit
CCAGGGGGAAGACCGATGGGCCCTTGGTGGAGGCGAGGTGGGGGTCTCAG1330.1592928833209572No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTTTTAGGGGTCTGGGAAGGGC1300.15569981076484538No Hit
GGGAAAAAGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCAGGGT1250.14971135650465903No Hit
GAATTCTCACAGGAGACGAGGGGGAAAAAGGGTTGGGGCGGATGCACTCC1140.13653675713224903No Hit
TTGCAGCAGCGGGTCAAGGGGAAGACGGATGGGCTCTGTGTGGAGGCTGA960.11497832179557811No Hit
GAATTCTCACAGGNGACGAGGGGGAAAAGGGTTGGGGCGGATGCACTCCC900.10779217668335449No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)