FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002253582

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002253582
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21592
Sequences flagged as poor quality0
Sequence length71-589
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCAGGGT940843.57169321971101No Hit
GGAACACATCCGGAGCCTTGGTGGGTGCTGAGGAGACGGTGACCAGGGTT238511.045757688032605No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAAGAGACGGTGACCATTGT231510.721563542052612No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCGTGGT14366.650611337532419No Hit
GGAACACATCCGGAGCCTTGGTGGGTGCTGAGGAGACGGTGACCGTGGTC5982.769544275657651No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACAGTGACCAGGGT5292.4499814746202295No Hit
GGAACACATCCGGAGCCTTGGTGGGTGCTGAAGAGACGGTGACCATTGTC5012.3203038162282326No Hit
GAATTCTCACAGGAGACGAGGGGGAAAAGGGTTGGGGCGGATGCACTCCC4051.8756947017413859No Hit
GGGAAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCAGGG3461.6024453501296776No Hit
CCAGGGGGAAGACCGATGGGCCCTTGGTGGAAGCGAGGTGGGGGTCTCAG1790.8290107447202667No Hit
TGTCTGCACCCTGATATGATGGGGAACACATCCGGAGCCTTGGTGGGTGC1530.7085957762134123No Hit
GGGTGCTGCAGAGGCTCAGCGGGAAGACCTTGGGGCTGGTCGGGGATGCC1160.5372360133382734No Hit
GGAACACATCCGGAGCCTTGGTGGGTGCTGAGGAGACAGTGACCAGGGTG860.39829566506113373No Hit
GGGAAAAAGGGTTGGGGCGGATGCACTCCCTGAAGAGACGGTGACCATTG820.3797702852908485No Hit
GGGTGCTGTCGAGGCTCAGCGGGAAGACCTTGGGGCTGGTCGGGGATGCC660.3056687662097073No Hit
GGAACACATCCGGAGCCTTGGTGGGTGCTGAGGAGACGGTGACCAGGGTG520.24082993701370878No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCAGGAT470.21767321230085215No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGATGACCAGGGT460.21304186735828082No Hit
GGCCCTTGGTGGAAGCTGCTGTCCTTGGTCCTGGCTGAGAGGAGGGCCCT380.17599110781771027No Hit
GGGGAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCAGGG360.16672841793256762No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAAGAGACGATGACCATTGT340.15746572804742495No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCAGGGC340.15746572804742495No Hit
CCAGGGGGAAGACCGATGGGCCCTTGGTGGAGGCGAGGTGGGGGTCTCAG330.15283438310485364No Hit
GGGAAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCGTGG330.15283438310485364No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCATGTCGGGCGCCTGGTCACTG320.14820303816228234No Hit
CGGGAAGACCTTGGGGCTGGTCGGGGATGCTGAGGAGACGGTGACCAGGG280.12967765839199705No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGAGCAGGGT260.12041496850685439No Hit
GGCCCTTGGTGGAGGCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAG260.12041496850685439No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAAGAGACGGTGACCACTGT240.11115227862171174No Hit
GGGAAAAAGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCAGGGT240.11115227862171174No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAAGAGACGGTGACCAGGGT230.10652093367914041No Hit
GGCCCTTGGTGGAAGCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAG230.10652093367914041No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)