FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002253597

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002253597
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3470
Sequences flagged as poor quality0
Sequence length75-587
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCAGGGT132138.069164265129686No Hit
GGAACACATCCGGAGCCTTGGTGGGTGCTGAGGAGACGGTGACCAGGGTT42412.219020172910664No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCGTGGT36810.605187319884726No Hit
GGAACACATCCGGAGCCTTGGTGGGTGCTGAGGAGACGGTGACCGTGGTC2326.685878962536022No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAAGAGACGGTGACCATTGT2176.253602305475504No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACAGTGACCAGGGT782.2478386167146973No Hit
GGAACACATCCGGAGCCTTGGTGGGTGCTGAAGAGACGGTGACCATTGTC702.0172910662824206No Hit
GAATTCTCACAGGAGACGAGGGGGAAAAGGGTTGGGGCGGATGCACTCCC651.8731988472622478No Hit
TGTCTGCACCCTGATATGATGGGGAACACATCCGGAGCCTTGGTGGGTGC521.4985590778097981No Hit
GGGAAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCAGGG320.9221902017291067No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAGGACCCGCAGGACAAAAG220.6340057636887608No Hit
CCAGGGGGAAGACCGATGGGCCCTTGGTGGAAGCGAGGTGGGGGTCTCAG210.6051873198847263No Hit
GGGTGCTGCAGAGGCTCAGCGGGAAGACCTTGGGGCTGGTCGGGGATGCC200.5763688760806917No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCATGTCGGGCGCCTGGTCACTG170.4899135446685879No Hit
GGGAAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCGTGG160.46109510086455335No Hit
GGAACACATCCGGAGCCTTGGTGGGTGCTGAGGAGACAGTGACCAGGGTG160.46109510086455335No Hit
GGAACACATCCGGAGCCTTGGTGGGTGCTGAGGAGACGGTGACCAGGGTG150.43227665706051877No Hit
GGGAAAAAGGGTTGGGGCGGATGCACTCCCTGAAGAGACGGTGACCATTG130.37463976945244953No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTTTTAGGGGTCTGGGAAGGGC100.2881844380403458No Hit
CCAGGGGGAAGACCGATGGGCCCTTGGTGGAGGCGAGGTGGGGGTCTGAG90.25936599423631124No Hit
GGCCCTTGGTGGAGGCTGCTGTCCTTGGTCCTGGCTGAGAGAGGGCCCCA90.25936599423631124No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCAGGAT90.25936599423631124No Hit
CGGGAAGACCTTGGGGCTGGTCGGGGATGCTGAGGAGACGGTGACCAGGG80.23054755043227668No Hit
GGCCCTTGGTGGAAGCTGCTGTCCTTGGTCCTGGCTGAGAGGAGGGCCCT70.20172910662824206No Hit
GGGAAAAAGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCAGGGT60.1729106628242075No Hit
GGGTGCTGTCGAGGCTCAGCGGGAAGACCTTGGGGCTGGTCGGGGATGCC60.1729106628242075No Hit
GGGAAAAGGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCAGGG50.1440922190201729No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCAGGGC50.1440922190201729No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACGAGGGT50.1440922190201729No Hit
GGAACACATCCGGAGCCTTGGTGGGTGCTGCGGAGACGGTGACCAGGGTT50.1440922190201729No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACTAGGGA40.11527377521613834No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGGGACCAGGGT40.11527377521613834No Hit
GGGAAAAGAGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCAGGGT40.11527377521613834No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCAGGGA40.11527377521613834No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGATCAGGGT40.11527377521613834No Hit
CCAGGGGGAAGACCGATGGGCCCTTGGTGGAAGCTCCCCCGTGCTGGCTC40.11527377521613834No Hit
CGGGAAGACCTTGGGGCTGGTCGGGGATGCTGAGGAGACGGTGACCGTGG40.11527377521613834No Hit
GGGAAAAAGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCGTGGT40.11527377521613834No Hit
GGGAAAGGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCAGGGT40.11527377521613834No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCAGTGT40.11527377521613834No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCCGGGT40.11527377521613834No Hit
GGAACACATCCGGAGCCTTGGTGGGTGCTGGAAGAGGCACGTTCTTTTCT40.11527377521613834No Hit
GAATTCTCACAGGNGACGAGGGGGAAAAGGGTTGGGGCGGATGCACTCCC40.11527377521613834No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)