FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002253598

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002253598
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7234
Sequences flagged as poor quality0
Sequence length62-590
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCAGGGT246234.03372961017418No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCGTGGT116616.118330107824164No Hit
GGAACACATCCGGAGCCTTGGTGGGTGCTGAGGAGACGGTGACCAGGGTT80011.05888858169754No Hit
GGAACACATCCGGAGCCTTGGTGGGTGCTGAGGAGACGGTGACCGTGGTC73110.105059441526127No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAAGAGACGGTGACCATTGT3404.700027647221455No Hit
GAATTCTCACAGGAGACGAGGGGGAAAAGGGTTGGGGCGGATGCACTCCC1632.2532485485208738No Hit
GGAACACATCCGGAGCCTTGGTGGGTGCTGAAGAGACGGTGACCATTGTC1051.451479126347802No Hit
TGTCTGCACCCTGATATGATGGGGAACACATCCGGAGCCTTGGTGGGTGC981.3547138512579486No Hit
GGGAAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCAGGG971.3408902405308267No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACAGTGACCAGGGT861.1888305225324853No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCATGTCGGGCGCCTGGTCACTG660.9123583079900469No Hit
CCAGGGGGAAGACCGATGGGCCCTTGGTGGAAGCGAGGTGGGGGTCTCAG420.5805916505391209No Hit
GGGAAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCGTGG370.5114735969035112No Hit
CGGGAAGACCTTGGGGCTGGTCGGGGATGCTGAGGAGACGGTGACCAGGG310.42853193254077965No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAGGACCCGCAGGACAAAAG220.30411943599668234No Hit
GGAACACATCCGGAGCCTTGGTGGGTGCTGAGGAGACAGTGACCAGGGTG210.29029582526956044No Hit
GGAACACATCCGGAGCCTTGGTGGGTGCTGAGGAGACGGTGACCAGGGTG170.2350013823610727No Hit
GGGGAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCAGGG150.20735416090682887No Hit
GGGGAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCGTGG120.16588332872546308No Hit
GGAACACATCCGGAGCCTTGGTGGGTGCATGTCGGGCGCCTGGTCACTGC120.16588332872546308No Hit
GGGAAAAAGGGTTGGGGCGGATGCACTCCCTGAAGAGACGGTGACCATTG110.15205971799834117No Hit
CGGGAAGACCTTGGGGCTGGTCGGGGATGCTGAGGAGACGGTGACCACTG110.15205971799834117No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCATGGT100.13823610727121927No Hit
GGGAAAAGGGTTGGGGGCGGATGCACTCCCTGAGGAGACGGTGACCGTGG90.12441249654409732No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)