FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002253609

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002253609
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42170
Sequences flagged as poor quality0
Sequence length65-590
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCAGGGT1961346.50936684847048No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCGTGGT554213.142044107185203No Hit
GGAACACATCCGGAGCCTTGGTGGGTGCTGAGGAGACGGTGACCAGGGTT37648.925776618449135No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAAGAGACGGTGACCATTGT33758.003319895660423No Hit
GGAACACATCCGGAGCCTTGGTGGGTGCTGAGGAGACGGTGACCGTGGTC18294.337206544937159No Hit
GAATTCTCACAGGAGACGAGGGGGAAAAGGGTTGGGGCGGATGCACTCCC12673.0045055726820014No Hit
GGGAAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCAGGG9452.240929570784918No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACAGTGACCAGGGT6881.6314915816931466No Hit
GGAACACATCCGGAGCCTTGGTGGGTGCTGAAGAGACGGTGACCATTGTC6161.4607540905857244No Hit
TGTCTGCACCCTGATATGATGGGGAACACATCCGGAGCCTTGGTGGGTGC4190.9935973440834717No Hit
GGGAAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCGTGG2360.5596395541854399No Hit
GGGAAAAAGGGTTGGGGCGGATGCACTCCCTGAAGAGACGGTGACCATTG1370.3248755039127342No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTTTTAGGGGTCTGGGAAGGGC1220.28930519326535453No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCATGTCGGGCGCCTGGTCACTG1160.2750770690064026No Hit
GGAACACATCCGGAGCCTTGGTGGGTGCTGAGGAGACAGTGACCAGGGTG820.19445103153900878No Hit
CCAGGGGGAAGACCGATGGGCCCTTGGTGGAAGCGAGGTGGGGGTCTCAG780.1849656153663742No Hit
GGAACACATCCGGAGCCTTGGTGGGTGCTGAGGAGACGGTGACCAGGGTG640.1517666587621532No Hit
TTGCAGCAGCGGGTCAAGGGGAAGACGGATGGGCTCTGTGTGGAGGCTGA560.13279582641688403No Hit
CCAGGGGGAAGACCGATGGGCCCTTGGTGGAGGCGAGGTGGGGGTCTCAG480.1138249940716149No Hit
GGGAAAAAGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCAGGGT480.1138249940716149No Hit
GAATTCTCACAGGAGACGAGGGGGAAAAAGGGTTGGGGCGGATGCACTCC470.11145364002845624No Hit
GGGGAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCAGGG440.10433957789898031No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)