FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002253618

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002253618
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42319
Sequences flagged as poor quality0
Sequence length60-589
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCAGGGT1877044.35360003780808No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCGTGGT641915.168127791299415No Hit
GGAACACATCCGGAGCCTTGGTGGGTGCTGAGGAGACGGTGACCAGGGTT39599.355135990926062No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAAGAGACGGTGACCATTGT38649.130650535220587No Hit
GGAACACATCCGGAGCCTTGGTGGGTGCTGAGGAGACGGTGACCGTGGTC22295.2671376922895154No Hit
GAATTCTCACAGGAGACGAGGGGGAAAAGGGTTGGGGCGGATGCACTCCC12703.001016092062667No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACAGTGACCAGGGT8482.0038280677709777No Hit
GGAACACATCCGGAGCCTTGGTGGGTGCTGAAGAGACGGTGACCATTGTC7271.7179044873461093No Hit
GGGAAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCAGGG5701.3469127342328504No Hit
TGTCTGCACCCTGATATGATGGGGAACACATCCGGAGCCTTGGTGGGTGC5231.2358515087785629No Hit
CCAGGGGGAAGACCGATGGGCCCTTGGTGGAAGCGAGGTGGGGGTCTCAG1930.4560599258016494No Hit
GGGAAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCGTGG1740.41116283466055437No Hit
GGAACACATCCGGAGCCTTGGTGGGTGCTGAGGAGACAGTGACCAGGGTG1460.3449987003473617No Hit
GGGAAAAAGGGTTGGGGCGGATGCACTCCCTGAAGAGACGGTGACCATTG1190.2811975708310688No Hit
GGAACACATCCGGAGCCTTGGTGGGTGCTGAGGAGACGGTGACCAGGGTG680.16068432618918216No Hit
CCAGGGGGAAGACCGATGGGCCCTTGGTGGAGGCGAGGTGGGGGTCTCAG630.14886930220468347No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCATGTCGGGCGCCTGGTCACTG450.10633521586048819No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTTTTAGGGGTCTGGGAAGGGC440.10397221106358846No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAGGACCCGCAGGACAAAAG430.10160920626668872No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)