FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002253635

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002253635
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences72964
Sequences flagged as poor quality0
Sequence length63-589
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCAGGGT3206743.94907077462859No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCGTGGT932812.784386820897979No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAAGAGACGGTGACCATTGT71749.832246039142591No Hit
GGAACACATCCGGAGCCTTGGTGGGTGCTGAGGAGACGGTGACCAGGGTT69659.545803409900772No Hit
GGAACACATCCGGAGCCTTGGTGGGTGCTGAGGAGACGGTGACCGTGGTC33334.568006140014254No Hit
GAATTCTCACAGGAGACGAGGGGGAAAAGGGTTGGGGCGGATGCACTCCC23923.2783290389781263No Hit
GGAACACATCCGGAGCCTTGGTGGGTGCTGAAGAGACGGTGACCATTGTC14091.9310893043144564No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACAGTGACCAGGGT13131.7995175703086452No Hit
GGGAAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCAGGG12821.7570308645359356No Hit
TGTCTGCACCCTGATATGATGGGGAACACATCCGGAGCCTTGGTGGGTGC8941.2252617729291158No Hit
GGGAAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCGTGG2930.40156789649690255No Hit
GGGAAAAAGGGTTGGGGCGGATGCACTCCCTGAAGAGACGGTGACCATTG2720.3727865796831314No Hit
GGAACACATCCGGAGCCTTGGTGGGTGCTGAGGAGACAGTGACCAGGGTG2370.32481771832684614No Hit
TTGCAGCAGCGGGTCAAGGGGAAGACGGATGGGCTCTGTGTGGAGGCTGA1440.19735760100871663No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCATGTCGGGCGCCTGGTCACTG1440.19735760100871663No Hit
GGAACACATCCGGAGCCTTGGTGGGTGCTGAGGAGACGGTGACCAGGGTG1300.17817005646620251No Hit
CCAGGGGGAAGACCGATGGGCCCTTGGTGGAAGCGAGGTGGGGGTCTCAG1200.16446466750726385No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTTTTAGGGGTCTGGGAAGGGC1110.15212981744421905No Hit
GGGAAAAAGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCAGGGT1080.1480182007565375No Hit
GAATTCTCACAGGAGACGAGGGGGAAAAAGGGTTGGGGCGGATGCACTCC780.10690203387972151No Hit
GGGGAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCAGGG770.10553149498382765No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)