FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002253639

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002253639
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6765
Sequences flagged as poor quality0
Sequence length61-583
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCAGGGT261938.713968957871394No Hit
GGAACACATCCGGAGCCTTGGTGGGTGCTGAGGAGACGGTGACCAGGGTT97314.382852919438285No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCGTGGT68110.066518847006652No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAAGAGACGGTGACCATTGT4576.755358462675535No Hit
GGAACACATCCGGAGCCTTGGTGGGTGCTGAGGAGACGGTGACCGTGGTC4246.267553584626756No Hit
GGAACACATCCGGAGCCTTGGTGGGTGCTGAAGAGACGGTGACCATTGTC1452.1433850702143387No Hit
GAATTCTCACAGGAGACGAGGGGGAAAAGGGTTGGGGCGGATGCACTCCC1442.12860310421286No Hit
CGGGAAGACCTTGGGGCTGGTCGGGGATGCCGAGGAGACGGTGACCAGGG1241.8329637841832964No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACAGTGACCAGGGT1181.7442719881744273No Hit
TGTCTGCACCCTGATATGATGGGGAACACATCCGGAGCCTTGGTGGGTGC861.271249076127125No Hit
GGGAAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCAGGG771.1382113821138211No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCATGTCGGGCGCCTGGTCACTG711.049519586104952No Hit
CGGGAAGACCTTGGGGCTGGTCGGGGATGCTGAGGAGACGGTGACCAGGG280.4138950480413895No Hit
GGAACACATCCGGAGCCTTGGTGGGTGCTGAGGAGACAGTGACCAGGGTG210.31042128603104213No Hit
GGGAAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCGTGG200.29563932002956395No Hit
GGAACACATCCGGAGCCTTGGTGGGTGCTGAGGAGACGGTGACCAGGGTG200.29563932002956395No Hit
GGGGAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCAGGG160.23651145602365115No Hit
GGCCCTTGGTGGAGGCTGCTGTCCTTGGTCCTGGCTGAGAGAGGGCCCCA160.23651145602365115No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTTTTAGGGGTCTGGGAAGGGC130.19216555801921656No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAGGACCCGCAGGACAAAAG130.19216555801921656No Hit
CCAGGGGGAAGACCGATGGGCCCTTGGTGGAAGCGAGGTGGGGGTCTCAG100.14781966001478197No Hit
GGAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCGTGGTC90.13303769401330376No Hit
GGGAAAAAGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCAGGGT80.11825572801182557No Hit
CCAGGGGGAAGACCGATGGGCCCTTGGTGGAAGCTGTGGCTACACTGCCC70.10347376201034737No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)